Posts Tagged ‘University of Maryland’

Oral Flora

Posted by amanda on Saturday, April 17th, 2010

mouth

Mouth with probably over 240 species of bacteria inside
http://www.flickr.com/photos/mbaruzza_2/

It’s been an interesting week in the stratosphere with a fireball in Wisconsin caught on video and a giant ash plume from the eruption of Iceland’s Eyjafjallajökull volcano.

But I’m feeling a bit introspective. Published in The ISME Journal, researchers (including a couple from the J. Craig Venter Institute in Rockville and the Institute For Genome Sciences at the University of Maryland School of Medicine) finally determined the bacterial diversity of our mouths or at least of 10 lucky individuals.

The researchers collected 26 separate samples from different parts of each healthy person’s mouth and pooled them, collecting and amplifying the RNA sequences present. RNA (or ribonucleic acid) contains the important coding information from DNA. RNA is necessary to every living organism, transcribed from DNA and translated into protein. Without RNA, there would just be pieces of DNA code, unable to be read or to be used as a template to construct protein. By isolating and amplifying a specific piece of RNA present only in bacteria, scientists are able to determine specific species through deciphering the sequences. In this study, around 1000 sequences per mouth were analyzed.

So what did they find? Contrary to past estimates that the mouth harbors 500-700 different bacterial species, this study found about 240 belonging to 9 different phyla or groups. As you may expect, not every mouth is the same. Subject 4 had the greatest number of bacteria (lucky duck), and only around 50 different species were expected to be shared between any two individuals with 11 shared between all 10 of the people studied. If you’re really into species (and who isn’t?), the magic 11 are: Haemophilus parainfluenzae, Streptococcus oralis, Streptococcus sanguinis, Granulicatella adiacens, Veillonella parvula, Veillonella dispar, Rothia aeria, Actinomyces naeslundii, Actinomyces odontolyticus, Prevotella melaninogenica and Capnocytophaga gingivalis. Interestingly, although every subject had sequences belonging to the group of bacteria known as Neisseria, no single specific Neisseria species was shared across all subjects. Our mouth bacterial flora also appears to be very distinct from that found in our colon, confirming that these are very different environments (as if we didn’t know that already).

It’s already known that bacterial flora can be passed from mother to child. I wonder if this study had been conducted with healthy couples who kiss frequently, if they would find a more similar bacterial diversity than 10 strangers. But that study probably isn’t a strong candidate for NIH funding.

Star Light, Star Really, Really Bright

Posted by amanda on Friday, March 26th, 2010

hubblep3-300x300

NASA Hubble Space Telescope Collection

The universe is expanding, and from far, far away in space and time, astronomers can see the formation of massive galaxies. These bright clusters of stars more than a few million light years away appear redder (or redshifted) than closer stars which helps in determining their distance and thus, time, in the development of the universe. Astronomers study these distant massive galaxies to better understand the timescale of galaxy formation and how galaxy shapes are formed, such as disks and bulges.

Observation of some of these massive galaxies in the early Universe (known as sub-millimeter galaxies due to their wavelength, or high redshift) has revealed a very high rate of star formation, higher than expected from models. One hypothesis for this fast rate is the possibility of the merging of two gas-rich galaxies. Direct examination of the star-forming regions of these very distant galaxies has been difficult due to the limitations of modern-day telescopes.

In a paper published this week online in Nature, a group of scientists, including two from the Department of Astronomy at the University of Maryland, use a unique solution to study one of these massive galaxies from the young Universe. By studying a sub-millimeter galaxy (known as SMMJ2135-0102), they took advantage of strong gravitational lensing that magnifies the galaxy from the bending of light by massive galaxy clusters that lie behind them. With this magnification, they then used high-resolution sub-millimeter imaging to resolve the star-forming regions at a linear scale of only 100 parsecs (one parsec is about 3.26 light years or 31 trillion kilometers), only slightly higher than the resolution of viewing giant molecular clouds in our own Milky Way.

By comparing brightness and size between the high redshift galaxy and local galaxies and molecular clouds in the present-day Universe, the researchers found that the star forming region was not only 100 times larger, but also 100,000,000 times brighter. And although the star-forming energetics are much higher than local galaxies, the underlying physics of the processes are the same. Because the physics are similar, this means that techniques used for star-forming processes in the Milky Way can be used for sub-millimeter galaxies.

So physics has not changed between the early Universe and the present-day Universe — young Universe galaxies are just really, really big, bright, and productive.

The Sound of Science

Posted by amanda on Thursday, February 11th, 2010

white-crowned sparrow in snow

White-crowned sparrow http://www.flickr.com/photos/lostinfog/ / CC BY-SA 2.0

In the middle of a snowstorm in Baltimore, there is a lack of sound. There are no moving cars, no birdsong in the trees, and the insulating snow dampens any cross-street conversation. Even the sirens seem more silent than usual. Luckily, we have the University of Maryland to remind us of the importance of urban sound. Published in the February issue of the Proceedings of the Royal Society B, David Luther from UM-College Park and Luis Baptista from the California Academy of Sciences report on their study on the effect of urban noise on white-crowned sparrows.

Human-made noise has long been suspected to have an impact on bird populations. Bird species are less abundant near highways and urbanization limits bird distribution. Noise has been shown to reduce nesting success and affect species interactions. Urban birds sing at a higher minimum frequency than rural birds to be heard above the low-pitched human-caused noise. (Think of the hum of the city.)

Birds, like humans, speak in vocal dialects that change with geographical region and often differ between neighboring populations. The alteration or change in learned songs between one generation and the next is described as the cultural evolution of songs. Some species of birds, such as the indigo bunting, are capable of changing dialects within less than a year, whereas others maintain their songs for decades or longer.

Luther and Baptista’s study is the first long-term study to document an increase in the minimum pitch of song over multiple generations of urban sparrows with a mixture of three dialects. By examining urban sparrow birdsong recordings spanning almost 30 years (1969, 1970, 1990, and 1998), they essentially observed the cultural evolution of sparrow song in a small San Francisco population. (Sparrows only live for 2 years, eliminating the possibility of recording the same individuals from the beginning to the end of the study.) Luther and Baptista found that the lowest frequency of birdsong rose over time with a shift to the dialect previously found within the most urban environment with the greatest ambient noise. This result of shifting dialect indicates an adaptation to the local acoustic environment over multiple generations. Songs (or dialects) change to a higher pitch to transmit more effectively in ambient noise.

So if urban noise affects bird dialects, does this mean that Baltimoreans will be speaking a higher pitch of Bawlmerese in 250 years? Maybe… if our breeding depended on it.